Fix Bibtexbrowser URL

Was: staging
Now: production

.gitignore

@@ -1,4 +1,6 @@
 # ignore generated artifacts
 /artifacts
 # ignore temporary directory if it remains after testing or so
-/temp
+/temp
+# ignore Mac OS hidden files
+/**/.DS_Store

BibtexbrowserTest.php

@@ -1455,6 +1455,72 @@ class BibtexbrowserTest extends PHPUnit_Framework_TestCase {
       $this->assertEquals(0, count($results));
     }
     
+    function test_tags_pagination() {
+      // Define the page size for pagination
+      bibtexbrowser_configure('TAGS_SIZE', 2);
+      
+      // Create a test BibTeX database with multiple entries and keywords
+      $bibtex = "@article{paper1,title={Paper One},keywords={tagA, tagB},year=2020}
+      @article{paper2,title={Paper Two},keywords={tagC},year=2020}
+      @article{paper3,title={Paper Three},keywords={tagD},year=2020}
+      @article{paper4,title={Paper Four},keywords={tagE},year=2020}";
+      
+      $test_data = fopen('php://memory','r+');
+      fwrite($test_data, $bibtex);
+      fseek($test_data, 0);
+      
+      $db = new BibDataBase();
+      $db->update_internal("inline", $test_data);
+      
+      // Create MenuManager display
+      $display = new MenuManager();
+      $display->setDB($db);
+      
+      // Test the first page
+      $_GET["tags_page"] = '1';
+      ob_start();
+      $display->display();
+      $output1 = ob_get_clean();
+      
+      // Tags are sorted alphabetically.
+      $this->assertStringContainsString('tagA', $output1);
+      $this->assertStringContainsString('tagB', $output1);
+      $this->assertStringNotContainsString('tagC', $output1);
+      
+      // Verify pagination link to the next page
+      $this->assertStringContainsString('keywords_page=2', $output1);
+      
+      // Test the second page
+      $_GET["keywords_page"] = '2';
+      ob_start();
+      $display->display();
+      $output2 = ob_get_clean();
+      
+      $this->assertStringContainsString('tagC', $output2);
+      $this->assertStringContainsString('tagD', $output2);
+      $this->assertStringNotContainsString('tagA', $output2);
+      $this->assertStringNotContainsString('tagE', $output2);
+      
+      // Verify navigation links to previous and next pages
+      $this->assertStringContainsString('keywords_page=1', $output2);
+      $this->assertStringContainsString('keywords_page=3', $output2);
+
+      // Test the third page
+      $_GET["keywords_page"] = '3';
+      ob_start();
+      $display->display();
+      $output3 = ob_get_clean();
+
+      $this->assertStringContainsString('tagE', $output3);
+      $this->assertStringNotContainsString('tagD', $output3);
+
+      // Verify navigation link to the previous page
+      $this->assertStringContainsString('keywords_page=2', $output3);
+      $this->assertStringNotContainsString('keywords_page=4', $output3); // No next page
+
+      // Clean up
+      unset($_GET["keywords_page"]);
+    }
     function test_venuevc_pagination() {
       // Define the page size for pagination
       bibtexbrowser_configure('VENUE_SIZE', 2);
@@ -1520,6 +1586,61 @@ class BibtexbrowserTest extends PHPUnit_Framework_TestCase {
       // Clean up
       unset($_GET["venue_page"]);
     }
+
+    function test_AcademicDisplay() {
+      // Create test BibTeX database with entries from different categories
+        $bibtex = "@article{journal1,title={Journal Article},author={John Doe},journal={Nature},year=2023,type={Journal Articles}}
+        @inproceedings{conf1,title={Conference Paper},author={Jane Smith},booktitle={ICSE},year=2023,type={Refereed Conference Papers}}
+        @book{book1,title={A Book},author={Bob Johnson},publisher={Springer},year=2022,type={Books}}
+        @techreport{tech1,title={Technical Report},author={Alice Brown},institution={MIT},year=2023,type={Technical Reports}}";
+        
+        $test_data = fopen('php://memory','x+');
+        fwrite($test_data, $bibtex);
+        fseek($test_data,0);
+        $db = new BibDataBase();
+        $db->update_internal("inline", $test_data);
+        
+        // Test with BIBTEXBROWSER_ACADEMIC_TOC = true
+        bibtexbrowser_configure('BIBTEXBROWSER_ACADEMIC_TOC', true);
+        
+        $display = new AcademicDisplay();
+        $display->setDB($db);
+        
+        ob_start();
+        $display->display();
+        $output_with_toc = ob_get_clean();
+        
+        // Verify TOC is present
+        // $this->assertStringContainsString('class="btb-menu-toc"', $output_with_toc);
+        $this->assertStringContainsString('Refereed Articles', $output_with_toc);
+        
+        // Verify HTML structure for both cases
+        $xml1 = new SimpleXMLElement("<doc>".$output_with_toc."</doc>");
+        $headers1 = $xml1->xpath('//div[@class="sheader"]');
+        $this->assertEquals(0, count($headers1));
+        $anchors = $xml1->xpath('//h2');
+        $this->assertGreaterThan(3, count($anchors));
+
+
+        // Test with BIBTEXBROWSER_ACADEMIC_TOC = false
+        bibtexbrowser_configure('BIBTEXBROWSER_ACADEMIC_TOC', false);
+        
+        $display2 = new AcademicDisplay();
+        $display2->setDB($db);
+        
+        ob_start();
+        $display2->display();
+        $output_without_toc = ob_get_clean();
+        
+        // Verify TOC is not present
+        $this->assertStringNotContainsString('class="btb-menu-toc"', $output_without_toc);
+        // But category headers should still be present
+        $this->assertStringContainsString('Refereed Articles', $output_without_toc);
+                
+        $xml2 = new SimpleXMLElement("<doc>".$output_without_toc."</doc>");
+        $headers2 = $xml2->xpath('//div[@class="sheader"]');
+        $this->assertGreaterThan(0, count($headers2));
+    }
 } // end class
 
 // Test implementation that records events

README.wiki

@@ -60,10 +60,11 @@ The following uses bibtexbrowser under the hood:
 * [[http://www.monperrus.net/martin/feeding-mysql-database-with-bibtexbrowser|Feeding a MySQL database from the content of a bibtex file]]
 * Publication lists in Wordpress with [[http://www.monperrus.net/martin/wp-publications|wp-publications]]
 * [[http://www.monperrus.net/martin/publication-lists-with-hal-and-bibtexbrowser|Publication lists with HAL and bibtexbrowser]]
+* Generating publication lists in DokuWiki using the [[https://www.dokuwiki.org/plugin:bb4dw|bb4dw plugin]]
 
 =====Demo and screenshot=====
 
-Demo: [[http://bibtexbrowser.sourceforge.net/bibtexbrowser.php?bib=metrics.bib|Here, you can browse a bibtex file dedicated to software metrics]]
+Demo: [[https://www.monperrus.net/martin/bibtexbrowser.php|Here, you can browse a bibtex file of Martin's papers.]]
 
 <img height="500" src="https://www.monperrus.net/martin/bibtexbrowser/bibtexbrowser-screenshot.png" alt="bibtexbrowser screenshot"/>
 

bibtexbrowser.css

@@ -0,0 +1,42 @@
+@import url("/static/fonts/manrope.css");
+body {
+    color: rgba(0, 0, 0, 0.8);
+    font-family: "Manrope",Arial,sans-serif;
+    font-weight: 500;
+    line-height: 1.8;
+    margin: 0;
+}
+.rheader {
+    display: none;
+}
+.sheader {
+    font-size: 1.5rem;
+    font-weight: 700;
+    padding-top: 1.5em;
+    padding-bottom: .5em;
+}
+.theader {
+    display: block;
+    font-size: 1.25rem;
+    font-weight: 700;
+    padding-top: .5em;
+    padding-bottom: .5em;
+}
+td.bibref {
+    display: none;
+}
+td.bibitem {
+    padding-left: 1.5rem;
+    display: block;
+}
+.bibtitle {
+    font-weight: 700;
+}
+a {
+    color: #C01632;
+    text-decoration: underline;
+    outline: none;
+}
+a:hover {
+    text-decoration: none;
+}

bibtexbrowser.german.php

@@ -7,13 +7,16 @@ $BIBTEXBROWSER_LANG['Book Chapters'] = "Buchbeiträge";
 $BIBTEXBROWSER_LANG['Chapter in'] = "Kapitel in";
 $BIBTEXBROWSER_LANG['In'] = "In";
 $BIBTEXBROWSER_LANG['Master\'s thesis'] = "Masterarbeit";
+$BIBTEXBROWSER_LANG['no.'] = "Nr.";
 $BIBTEXBROWSER_LANG['No date'] = "Kein Datum";
 $BIBTEXBROWSER_LANG['No publications present'] = "Keine Publikationen vorhanden";
 $BIBTEXBROWSER_LANG['Other Publications'] = "Andere Veröffentlichungen";
+$BIBTEXBROWSER_LANG['pp.'] = "S.";
 $BIBTEXBROWSER_LANG['PhD thesis'] = "Dissertation";
 $BIBTEXBROWSER_LANG['Refereed Articles'] = "Zeitschriftenbeiträge";
 $BIBTEXBROWSER_LANG['Refereed Conference Papers'] = "Konferenzbeiträge";
 $BIBTEXBROWSER_LANG['Refereed Workshop Papers'] = "Workshopbeiträge";
 $BIBTEXBROWSER_LANG['Technical report'] = "Technischer Bericht";
+$BIBTEXBROWSER_LANG['vol.'] = "Bd.";
 @define('LAST_AUTHOR_SEPARATOR',' und ');
-?>
+?>

bibtexbrowser.local.php

@@ -4,6 +4,10 @@ bibtexbrowser_configure('ABBRV_TYPE','key');
 bibtexbrowser_configure('BIBTEXBROWSER_LAYOUT','table');
 // URL to individual files
 bibtexbrowser_configure('BIBTEXBROWSER_URL',"https://publications.zrd-saar.de/");
+// URL to jQuery
+bibtexbrowser_configure('JQUERY_URI', '/static/jquery-3.6.4.min.js');
+// URL to MathJax
+bibtexbrowser_configure('MATHJAX_URI', '/static/TeX-AMS_HTML.V2.7.1.js');
 // target for links
 bibtexbrowser_configure('BIBTEXBROWSER_LINKS_TARGET','_blank');
 // use IEEE Transactions-like style, e.g. puts authors in front of title
@@ -37,4 +41,23 @@ bibtexbrowser_configure('BIBTEXBROWSER_URL_BUILDER', 'url_builder_static');
 function url_builder_static($bibentry) {
 	return BIBTEXBROWSER_URL.'keys/'.$bibentry->getKey().'.html';
 }
-?>
+
+// A custom function for the MathJax footer to use the static URL instead of the CDN one
+// Also include iframeResizer JS
+function javascript_math() {
+    ?>
+    <script>
+        MathJax = {
+            tex: {
+                inlineMath: [['$', '$'], ['\\(', '\\)']]
+            }
+        };
+    </script>
+    <script type="text/javascript" id="MathJax-script" async src="/static/tex-mml-chtml.js">
+    </script>
+    <script type="text/javascript" id="iFrameResizer" src="/static/iframe-resizer.child.js">
+    </script>
+    <?php
+}
+
+?>

bibtexbrowser.php

@@ -236,7 +236,7 @@ if (defined('ENCODING')) {
 @define('BIBTEXBROWSER_URL',basename(__FILE__));
 
 // Specify the location of the cache file for servers that need temporary files written in a specific location
-@define('CACHE_DIR','');
+@define('CACHE_DIR','.');
 
 // Specify the location of the bib file for servers that need do not allow slashes in URLs,
 // where the bib file and bibtexbrowser.php are in different directories. 
@@ -368,7 +368,7 @@ function _zetDB($bibtex_filenames) {
   // ---------------------------- HANDLING caching of compiled bibtex files
   // for sake of performance, once the bibtex file is parsed
   // we try to save a "compiled" in a txt file
-  $compiledbib = CACHE_DIR.'bibtexbrowser_'.md5($bibtex_filenames).'.dat';
+  $compiledbib = c("CACHE_DIR").'/bibtexbrowser_'.md5($bibtex_filenames).'.dat';
 
   $parse=filemtime(__FILE__)>@filemtime($compiledbib);
 
@@ -2524,11 +2524,11 @@ function JanosBibliographyStyle($bibentry) {
   }
 
   if ($type=="inproceedings" && $bibentry->hasField(BOOKTITLE)) {
-      $booktitle = '<span class="bibbooktitle">'.'In '.$bibentry->getField(BOOKTITLE).'</span>';
+      $booktitle = '<span class="bibbooktitle">'.__('In').' '.$bibentry->getField(BOOKTITLE).'</span>';
   }
 
   if ($type=="incollection" && $bibentry->hasField(BOOKTITLE)) {
-      $booktitle = '<span class="bibbooktitle">'.'Chapter in '.$bibentry->getField(BOOKTITLE).'</span>';
+      $booktitle = '<span class="bibbooktitle">'.__('Chapter in').' '.$bibentry->getField(BOOKTITLE).'</span>';
   }
 
   if ($type=="article" && $bibentry->hasField("journal")) {
@@ -2551,14 +2551,14 @@ function JanosBibliographyStyle($bibentry) {
 
   $publisher='';
   if ($type=="phdthesis") {
-      $publisher = 'PhD thesis, '.$bibentry->getField(SCHOOL);
+      $publisher = __('PhD thesis').', '.$bibentry->getField(SCHOOL);
   }
 
   if ($type=="mastersthesis") {
-      $publisher = 'Master\'s thesis, '.$bibentry->getField(SCHOOL);
+      $publisher = __('Master\'s thesis').', '.$bibentry->getField(SCHOOL);
   }
   if ($type=="techreport") {
-      $publisher = 'Technical report, ';
+      $publisher = __('Technical report').', ';
       $publisher .=$bibentry->getField("institution");
       if ($bibentry->hasField("number")) {
         $publisher .= ' '.$bibentry->getField("number");
@@ -2571,19 +2571,29 @@ function JanosBibliographyStyle($bibentry) {
   if ($publisher!='') $entry[] = $publisher;
 
   if ($type=="article") {
-    if ($bibentry->hasField('volume')) $entry[] =  "vol. ".$bibentry->getField("volume");
+    if ($bibentry->hasField('volume')) $entry[] =  __("vol.")." ".$bibentry->getField("volume");
-    if ($bibentry->hasField('number')) $entry[] =  'no. '.$bibentry->getField("number");
+    if ($bibentry->hasField('number')) $entry[] =  __('no.').' '.$bibentry->getField("number");
   }
 
   if ($bibentry->hasField('address')) $entry[] =  $bibentry->getField("address");
 
-  if ($bibentry->hasField('pages')) $entry[] = str_replace("--", "-", "pp. ".$bibentry->getField("pages"));
+  if ($bibentry->hasField('pages')) $entry[] = str_replace("--", "-", __("pp.")." ".$bibentry->getField("pages"));
 
 
   if ($bibentry->hasField(YEAR)) $entry[] = $bibentry->getYear();
 
   $result = implode(", ",$entry).'.';
 
+  // some comments (e.g. acceptance rate)?
+  if ($bibentry->hasField('comment')) {
+      $result .=  " (".$bibentry->getField("comment").")";
+  }
+
+  // some notes (e.g. "accepted for publishing")?
+  if (($type!="misc") && $bibentry->hasField('note')) {
+      $result .=  " (".$bibentry->getField("note").")";
+  }
+
   // add the Coin URL
   $result .=  "\n".$bibentry->toCoins();
 
@@ -2641,9 +2651,9 @@ function VancouverBibliographyStyle($bibentry) {
     $booktitle = $editor;
     $booktitle = $bibentry->getField("note");
   } else if ($type=="inproceedings") {
-      $booktitle = 'In: ' . $editor . $bibentry->getField(BOOKTITLE);
+      $booktitle = __('In').': ' . $editor . $bibentry->getField(BOOKTITLE);
   } else if ($type=="incollection") {
-      $booktitle = 'Chapter in ';
+      $booktitle = __('Chapter in').' ';
       if ($editor!='') $booktitle .= $editor;
       $booktitle .= $bibentry->getField(BOOKTITLE);
   } else if ($type=="article") {
@@ -2656,11 +2666,11 @@ function VancouverBibliographyStyle($bibentry) {
 
   $publisher='';
   if ($type=="phdthesis") {
-      $publisher = 'PhD thesis, '.$bibentry->getField(SCHOOL);
+      $publisher = __('PhD thesis').', '.$bibentry->getField(SCHOOL);
   } else if ($type=="mastersthesis") {
-      $publisher = 'Master\'s thesis, '.$bibentry->getField(SCHOOL);
+      $publisher = __('Master\'s thesis').', '.$bibentry->getField(SCHOOL);
   } else if ($type=="techreport") {
-      $publisher = 'Technical report, '.$bibentry->getField("institution");
+      $publisher = __('Technical report').', '.$bibentry->getField("institution");
   }
   if ($bibentry->hasField("publisher")) {
     $publisher = $bibentry->getField("publisher");
@@ -2994,7 +3004,7 @@ class MenuManager {
     }  else $page = 1;
 
 
-    if (count($tags)>0) $this->displayMenu('Keywords', $tags, $page, bibtexbrowser_configuration("MENU_SIZE"), Q_TAG_PAGE,
+    if (count($tags)>0) $this->displayMenu('Keywords', $tags, $page, bibtexbrowser_configuration("TAGS_SIZE"), Q_TAG_PAGE,
          Q_TAG);
   }
 
@@ -3477,7 +3487,7 @@ class AcademicDisplay  {
     $this->db = createBibDataBase();
     $this->db->bibdb = $this->entries;
 
-    if (BIBTEXBROWSER_ACADEMIC_TOC != true) {
+    if (c("BIBTEXBROWSER_ACADEMIC_TOC") == false) {
       foreach (_DefaultBibliographySections() as $section) {
         $this->search2html($section['query'],$section['title']);
       }
@@ -3511,7 +3521,7 @@ class AcademicDisplay  {
         echo "\n<a name=\"".$section['anchor']."\"></a>";
         echo "<h".BIBTEXBROWSER_HTMLHEADINGLEVEL.">";
         echo $section['title']." (".$section['count'].")";
-        echo "</h".BIBTEXBROWSER_HTMLHEADINGLEVEL.">\n",
+        echo "</h".BIBTEXBROWSER_HTMLHEADINGLEVEL.">\n";
         $section['display']->display();
       }
     }

makehtml.sh

@@ -16,7 +16,7 @@ BIBTEX_URL="https://cloud.hiz-saarland.de/public.php/dav/files/Yj8FtZsTS9TkFWG"
 # command to run BibtexBrowser
 BIBTEXBROWSER="${PHP} -c \"php_cli.ini\" -f \"bibtexbrowser.php\""
 
-# DELETEME
+# remove any remaining artifacts and temporary files
 rm -rf "artifacts" "temp"
 # create output directories and download bibtex file
 mkdir -p "artifacts/keys" "temp"
@@ -54,4 +54,4 @@ done
 
 # Clean up
 rm -rf "temp"
-rm bibtexbrowser_*.dat
+rm -f bibtexbrowser_*.dat

static/fonts/manrope.css

@@ -0,0 +1,62 @@
+/* manrope-200 - latin_latin-ext */
+@font-face {
+  font-display: swap; /* Check https://developer.mozilla.org/en-US/docs/Web/CSS/@font-face/font-display for other options. */
+  font-family: 'Manrope';
+  font-style: normal;
+  font-weight: 200;
+  src: url('/static/fonts/manrope-v19-latin_latin-ext-200.woff2') format('woff2'); /* Chrome 36+, Opera 23+, Firefox 39+, Safari 12+, iOS 10+ */
+}
+
+/* manrope-300 - latin_latin-ext */
+@font-face {
+  font-display: swap; /* Check https://developer.mozilla.org/en-US/docs/Web/CSS/@font-face/font-display for other options. */
+  font-family: 'Manrope';
+  font-style: normal;
+  font-weight: 300;
+  src: url('/static/fonts/manrope-v19-latin_latin-ext-300.woff2') format('woff2'); /* Chrome 36+, Opera 23+, Firefox 39+, Safari 12+, iOS 10+ */
+}
+
+/* manrope-regular - latin_latin-ext */
+@font-face {
+  font-display: swap; /* Check https://developer.mozilla.org/en-US/docs/Web/CSS/@font-face/font-display for other options. */
+  font-family: 'Manrope';
+  font-style: normal;
+  font-weight: 400;
+  src: url('/static/fonts/manrope-v19-latin_latin-ext-regular.woff2') format('woff2'); /* Chrome 36+, Opera 23+, Firefox 39+, Safari 12+, iOS 10+ */
+}
+
+/* manrope-500 - latin_latin-ext */
+@font-face {
+  font-display: swap; /* Check https://developer.mozilla.org/en-US/docs/Web/CSS/@font-face/font-display for other options. */
+  font-family: 'Manrope';
+  font-style: normal;
+  font-weight: 500;
+  src: url('/static/fonts/manrope-v19-latin_latin-ext-500.woff2') format('woff2'); /* Chrome 36+, Opera 23+, Firefox 39+, Safari 12+, iOS 10+ */
+}
+
+/* manrope-600 - latin_latin-ext */
+@font-face {
+  font-display: swap; /* Check https://developer.mozilla.org/en-US/docs/Web/CSS/@font-face/font-display for other options. */
+  font-family: 'Manrope';
+  font-style: normal;
+  font-weight: 600;
+  src: url('/static/fonts/manrope-v19-latin_latin-ext-600.woff2') format('woff2'); /* Chrome 36+, Opera 23+, Firefox 39+, Safari 12+, iOS 10+ */
+}
+
+/* manrope-700 - latin_latin-ext */
+@font-face {
+  font-display: swap; /* Check https://developer.mozilla.org/en-US/docs/Web/CSS/@font-face/font-display for other options. */
+  font-family: 'Manrope';
+  font-style: normal;
+  font-weight: 700;
+  src: url('/static/fonts/manrope-v19-latin_latin-ext-700.woff2') format('woff2'); /* Chrome 36+, Opera 23+, Firefox 39+, Safari 12+, iOS 10+ */
+}
+
+/* manrope-800 - latin_latin-ext */
+@font-face {
+  font-display: swap; /* Check https://developer.mozilla.org/en-US/docs/Web/CSS/@font-face/font-display for other options. */
+  font-family: 'Manrope';
+  font-style: normal;
+  font-weight: 800;
+  src: url('/static/fonts/manrope-v19-latin_latin-ext-800.woff2') format('woff2'); /* Chrome 36+, Opera 23+, Firefox 39+, Safari 12+, iOS 10+ */
+}